References
Open Science: Tools Applications, & Workflow
Preface
Introduction
Project Setup and Documentation
1
Overview of the PARA system
2
Project Subfolder Structure
3
Writing Readmes - Your First Assignment
4
Getting Your Project on GitHub: Standards and Workflow
5
Setting Up Zotero for Your Project - Early Success with Writing and Reference Management
"Pre-Data" and Raw Data: Setting Up and Executing Raw Data Collection and Curation Infrastructure for Different Project Types
6
Field Projects
7
Laboratory Projects
8
Review Projects #todo
9
Data Synthesis Projects #todo - ask Hava for opinions as she is an expert
Quality Assurance (QA) and Quality Control (QC) on Raw Data
Data Munging -also called data wrangling
10
Reproducibly Pulling Raw Data
11
Quality Control (QC) and Data Cleaning
12
Standardizing Formats #todo
Jelinski Lab Style Guides and Standards
13
Jelinski Lab R code Style Guide and Standards
14
Summary
References
Workshop: Jelinski Lab Open and Reproducible Science Workflow 18DEC2023
15
Part 1: Overview and Setting up GitHub
16
Part 2: Using GitHub Desktop, Local Workflow, R Reproducibility, Zotero
17
Part 3: Creating E-Books with Quarto and GitHub Pages
18
Part 4: Future Plans, Suggestions and Wrap-up
References
14
Summary
15
Part 1: Overview and Setting up GitHub